| Pick | Player | Position | Former Club |
| 1 | Brian Ching | Forward | Houston Dynamo |
| 2 | Zarek Valentin | Defender | Chivas USA |
| 3 | Justin Mapp | Midfielder | Philadelphia Union |
| 4 | Bobby Burling | Defender | San Jose Earthquakes |
| 5 | Jeb Brovsky | Midfielder | Vancouver Whitecaps |
| 6 | Collen Warner | Midfielder | Real Salt Lake |
| 7 | Josh Gardner | Defender | Columbus Crew |
| 8 | Sanna Nyassi | Midfielder | Colorado Rapids |
| 9 | James Riley* | Defender | Seattle Sounders |
| 10 | Seth Sinovic | Defender | Sporting Kansas City |
* Immediately after selecting James Riley in the Expansion Draft, Montreal traded Riley to Chivas USA in exchange for Justin Braun and Gerson Mayen.
Note: After the conclusion of the Expansion Draft, MLS conducted a draft of waived players, open to all 19 clubs. The Philadelphia Union selected former Vancouver Whitecaps FC midfielder Nizar Khalfan. Khalfan was the only waived player selected.
